Search for: All records

Understanding factors that influence a species’ distribution and abundance across the annual cycle is required for range-wide conservation. Thousands of imperiled red knots ( Calidris cantus rufa ) stop on Virginia’s barrier islands each year to replenish fat during spring migration. We investigated the variation in red knot presence and flock size, the effects of prey on this variation, and factors influencing prey abundance on Virginia’s barrier islands. We counted red knots and collected potential prey samples at randomly selected sites from 2007–2018 during a two-week period during early and peak migration. Core samples contained crustaceans (Orders Amphipoda and Calanoida), blue mussels ( Mytilus edulis) , coquina clams ( Donax variabilis ), and miscellaneous prey (horseshoe crab eggs ( Limulus polyphemus ), angel wing clams ( Cyrtopleura costata ), and other organisms (e.g., insect larvae, snails, worms)). Estimated red knot peak counts in Virginia during 21–27 May were highest in 2012 (11,959) and lowest in 2014 (2,857; 12-year peak migration x ¯ = 7,175, SD = 2,869). Red knot and prey numbers varied across sampling periods and substrates (i.e., peat and sand). Red knots generally used sites with more prey. Miscellaneous prey ( x ¯ = 2401.00/m 2 , SE = 169.16) influenced red knot presence at a site early in migration, when we only sampled on peat banks. Coquina clams ( x ¯ = 1383.54/m 2 , SE = 125.32) and blue mussels ( x ¯ = 777.91/m 2 , SE = 259.31) affected red knot presence at a site during peak migration, when we sampled both substrates. Few relationships between prey and red knot flock size existed, suggesting that other unmeasured factors determined red knot numbers at occupied sites. Tide and mean daily water temperature affected prey abundance. Maximizing the diversity, availability, and abundance of prey for red knots on barrier islands requires management that encourages the presence of both sand and peat bank intertidal habitats. 

Shorebird reproductive success monitoring often relies on surveys of nest and brood survival. However, conclusions may be inaccurate due to the challenges of gathering and interpreting evidence of nest and brood fate. We tested the efficacy of in-person versus camera- based monitoring to quantify productivity and evaluate threats to reproductive success of American Oystercatchers (Haematopus palliatus) and Piping Plovers (Charadrius melodus) at Metompkin Island, Virginia. We deployed 73 cameras using three set-ups: at nests, at brood sites, and along a transect. The same areas were also surveyed in-person approximately once per week. Camera monitoring confirmed nest fate where in-person monitors could not determine fate from field evidence and provided insight to the effectiveness of mammalian predator removal. However, cameras failed to capture causes of mortality for mobile chicks and did not consistently document chicks where in-person monitoring confirmed successful broods. Cameras produced large quantities of data requiring 63.5–315 hours to review, depending on camera set- up. We found cameras were useful for validating conclusions from in-person monitoring, highlighting threats that surveys missed, and characterizing the predator community. Managers should consider the tradeoff between potential benefits and required effort of camera monitoring when deciding which method would be effective for meeting management goals. 

Cleavage of aromatic carbon–chlorine bonds is critical for the degradation of toxic industrial compounds. Here, we solved the X-ray crystal structure of chlorothalonil dehalogenase (Chd) from Pseudomonas sp. CTN-3, with 15 of its N-terminal residues truncated (Chd T ), using single-wavelength anomalous dispersion refined to 1.96 Å resolution. Chd has low sequence identity (<15%) compared with all other proteins whose structures are currently available, and to the best of our knowledge, we present the first structure of a Zn(II)-dependent aromatic dehalogenase that does not require a coenzyme. Chd T forms a “head-to-tail” homodimer, formed between two α-helices from each monomer, with three Zn(II)-binding sites, two of which occupy the active sites, whereas the third anchors a structural site at the homodimer interface. The catalytic Zn(II) ions are solvent-accessible via a large hydrophobic (8.5 × 17.8 Å) opening to bulk solvent and two hydrophilic branched channels. Each active-site Zn(II) ion resides in a distorted trigonal bipyramid geometry with His 117 , His 257 , Asp 116 , Asn 216 , and a water/hydroxide as ligands. A conserved His residue, His 114 , is hydrogen-bonded to the Zn(II)-bound water/hydroxide and likely functions as the general acid-base. We examined substrate binding by docking chlorothalonil (2,4,5,6-tetrachloroisophtalonitrile, TPN) into the hydrophobic channel and observed that the most energetically favorable pose includes a TPN orientation that coordinates to the active-site Zn(II) ions via a CN and that maximizes a π–π interaction with Trp 227 . On the basis of these results, along with previously reported kinetics data, we propose a refined catalytic mechanism for Chd-mediated TPN dehalogenation.